Supplementary Materials for:

MORPH: Probabilistic alignment combined with hidden Markov models of cis-regulatory modules

Saurabh Sinha & Xin He

• Source code for Morphalign and MorphMS programs. Version 0.1. (beta)
  • Note: We recommend use of the next generation software, "Emma", that has the same functionality as Morph.
  • "Emma" may be downloaded here.
• Blastoderm.a-p set: CRMs PWMs Alignments
• Mesoderm set: CRMs PWMs Alignments
• Results on Synthetic Data generated by a new simulation program.